CLCR_04496 protein (Cladophialophora carrionii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CLCR_04496

Uncharacterized protein. (1887 aa)

Predicted Functional Partners:

rgf1

0.715

ssb1

0.658

NTF2

0.656

NPL4

0.655

ssb2

0.630

mph1

0.630

CLCR_04261

0.630

tubA

0.630

CLCR_01561

0.609

new1

0.609

Your Current Organism:

Cladophialophora carrionii

NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLCR_01561	CLCR_04261	A0A1C1CAG4	A0A1C1CIU0	Uncharacterized protein.	Uncharacterized protein.	0.761
CLCR_01561	CLCR_04496	A0A1C1CAG4	A0A1C1CL16	Uncharacterized protein.	Uncharacterized protein.	0.609
CLCR_01561	tubA	A0A1C1CAG4	A0A1C1CTX3	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.761
CLCR_04261	CLCR_01561	A0A1C1CIU0	A0A1C1CAG4	Uncharacterized protein.	Uncharacterized protein.	0.761
CLCR_04261	CLCR_04496	A0A1C1CIU0	A0A1C1CL16	Uncharacterized protein.	Uncharacterized protein.	0.630
CLCR_04261	new1	A0A1C1CIU0	A0A1C1CAJ4	Uncharacterized protein.	Histone-fold domain-containing protein new1.	0.761
CLCR_04496	CLCR_01561	A0A1C1CL16	A0A1C1CAG4	Uncharacterized protein.	Uncharacterized protein.	0.609
CLCR_04496	CLCR_04261	A0A1C1CL16	A0A1C1CIU0	Uncharacterized protein.	Uncharacterized protein.	0.630
CLCR_04496	NPL4	A0A1C1CL16	A0A1C1D026	Uncharacterized protein.	Nuclear protein localization protein 4.	0.655
CLCR_04496	NTF2	A0A1C1CL16	A0A1C1C964	Uncharacterized protein.	Nuclear transport factor 2.	0.656
CLCR_04496	mph1	A0A1C1CL16	A0A1C1CAZ0	Uncharacterized protein.	ATP-dependent DNA helicase mph1.	0.630
CLCR_04496	new1	A0A1C1CL16	A0A1C1CAJ4	Uncharacterized protein.	Histone-fold domain-containing protein new1.	0.609
CLCR_04496	rgf1	A0A1C1CL16	A0A1C1D1V5	Uncharacterized protein.	Rho1 guanine nucleotide exchange factor 1.	0.715
CLCR_04496	ssb1	A0A1C1CL16	A0A1C1CYU6	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.658
CLCR_04496	ssb2	A0A1C1CL16	A0A1C1CA83	Uncharacterized protein.	Replication factor A protein 2.	0.630
CLCR_04496	tubA	A0A1C1CL16	A0A1C1CTX3	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.630
NPL4	CLCR_04496	A0A1C1D026	A0A1C1CL16	Nuclear protein localization protein 4.	Uncharacterized protein.	0.655
NPL4	NTF2	A0A1C1D026	A0A1C1C964	Nuclear protein localization protein 4.	Nuclear transport factor 2.	0.961
NPL4	mph1	A0A1C1D026	A0A1C1CAZ0	Nuclear protein localization protein 4.	ATP-dependent DNA helicase mph1.	0.944
NTF2	CLCR_04496	A0A1C1C964	A0A1C1CL16	Nuclear transport factor 2.	Uncharacterized protein.	0.656