STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ala1Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family. (962 aa)    
Predicted Functional Partners:
cut9
Anaphase-promoting complex subunit cut9.
   
 0.953
CLCR_06662
Anaphase-promoting complex component Cut20/Apc4.
   
 0.952
bimE
Negative regulator of mitosis.
    
 0.950
CLCR_03894
Anaphase-promoting complex subunit Apc5.
   
 0.949
CLCR_09708
Anaphase-promoting complex subunit 2; Belongs to the cullin family.
    
 0.948
CLCR_11232
DOC domain-containing protein.
    
 0.947
CLCR_02035
Anaphase promoting complex subunit 11.
    
 0.943
CLCR_00547
Checkpoint serine/threonine-protein kinase.
    
 0.937
GRS1
Glycine--tRNA ligase 1, mitochondrial.
  
 
 0.871
Dars2
Aspartate--tRNA ligase, mitochondrial.
 
  
 0.851
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.