STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_04669Transcriptional regulatory protein DEP1. (654 aa)    
Predicted Functional Partners:
CLCR_08830
Uncharacterized protein.
    
 0.922
RPD3
Histone deacetylase RPD3.
    
 0.900
CLCR_08363
RXT2_N domain-containing protein.
    
 
 0.795
hat2
Histone acetyltransferase type B subunit 2.
    
 0.764
HOS2
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.757
CLCR_07343
Uncharacterized protein.
    
 
 0.692
CLCR_07432
PHD domain-containing protein.
    
 
 0.692
CLCR_09536
Putative ARID/BRIGHT domain protein (SWI1).
    
  0.663
cdc1
DNA polymerase subunit delta-2.
    
 0.624
mus81
Crossover junction endonuclease mus81.
    
 0.619
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.