STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_04783Uncharacterized protein. (504 aa)    
Predicted Functional Partners:
TEF3
Elongation factor 3.
   
 
 0.990
NEW1
[NU+] prion formation protein 1.
   
 
 0.989
rplC
50S ribosomal protein L3.
  
 0.989
MRPS16
37S ribosomal protein S16, mitochondrial.
   
 
 0.986
CLCR_10637
Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.
  
 0.986
MRPL6
54S ribosomal protein L6, mitochondrial; Belongs to the universal ribosomal protein uL6 family.
  
 0.986
mrpl8
54S ribosomal protein L8, mitochondrial; Belongs to the bacterial ribosomal protein bL17 family.
  
 0.985
CLCR_03031
37S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.985
CLCR_06056
Mitochondrial 54S ribosomal protein YmL10/YmL18.
  
 0.984
MRPL23
54S ribosomal protein L23, mitochondrial.
  
 0.984
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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