STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_07488ThiJ/PfpI family protein. (244 aa)    
Predicted Functional Partners:
CLCR_09677
Tryptophan synthase.
  
 
  0.830
SOD4
Cell surface superoxide dismutase [Cu-Zn] 4.
   
 0.826
CLCR_03092
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
 0.826
CLCR_06167
Ubiquitin-like domain-containing protein.
   
  0.686
UBI4
Polyubiquitin.
   
  0.686
hus5
SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.670
CLCR_08814
BZIP domain-containing protein.
   
  0.666
CLCR_10902
Ubiquitin-40S ribosomal protein S27a.
   
  0.666
RGN
Regucalcin.
  
 
  0.663
nudA
Dynein heavy chain, cytoplasmic.
     
 0.649
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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