STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_07439Myb family transcription factor. (207 aa)    
Predicted Functional Partners:
hat2
Histone acetyltransferase type B subunit 2.
   
 0.760
CLCR_04296
Mitochondrial 37S ribosomal protein RSM18.
    
   0.507
CLCR_02912
Uncharacterized protein.
    
 
 0.492
CLCR_05265
Uncharacterized protein.
   
 0.458
CLCR_05212
Uncharacterized protein.
   
 0.458
PHO85
Negative regulator of the PHO system; Belongs to the protein kinase superfamily.
   
 0.458
CLCR_10990
Protein kinase domain-containing protein.
   
 0.458
CLCR_10754
Putative Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.
   
 0.458
YTA12
Mitochondrial respiratory chain complexes assembly protein YTA12.
    
 
 0.436
rplC
50S ribosomal protein L3.
    
 
 0.435
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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