CLCR_06974 protein (Cladophialophora carrionii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CLCR_06974

Putative transporter. (529 aa)

Predicted Functional Partners:

CLCR_05638

0.503

lcc2

0.503

CLCR_00456

0.437

CLCR_01196

0.437

GPD

0.435

CLCR_06356

0.430

CLCR_06489

0.430

Your Current Organism:

Cladophialophora carrionii

NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLCR_00456	CLCR_06356	A0A1C1CC43	A0A1C1C8F8	Beta-1,3-glucan-binding protein.	EF-hand domain-containing protein; Belongs to the calmodulin family.	0.518
CLCR_00456	CLCR_06489	A0A1C1CC43	A0A1C1C8L0	Beta-1,3-glucan-binding protein.	Calmodulin; Belongs to the calmodulin family.	0.518
CLCR_00456	CLCR_06974	A0A1C1CC43	A0A1C1CMJ7	Beta-1,3-glucan-binding protein.	Putative transporter.	0.437
CLCR_00456	lcc2	A0A1C1CC43	A0A1C1D2H0	Beta-1,3-glucan-binding protein.	Laccase-2.	0.448
CLCR_01196	CLCR_06356	A0A1C1CD52	A0A1C1C8F8	Beta-1,3-glucan-binding protein.	EF-hand domain-containing protein; Belongs to the calmodulin family.	0.518
CLCR_01196	CLCR_06489	A0A1C1CD52	A0A1C1C8L0	Beta-1,3-glucan-binding protein.	Calmodulin; Belongs to the calmodulin family.	0.518
CLCR_01196	CLCR_06974	A0A1C1CD52	A0A1C1CMJ7	Beta-1,3-glucan-binding protein.	Putative transporter.	0.437
CLCR_01196	lcc2	A0A1C1CD52	A0A1C1D2H0	Beta-1,3-glucan-binding protein.	Laccase-2.	0.448
CLCR_05638	CLCR_06974	A0A1C1C7B2	A0A1C1CMJ7	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	Putative transporter.	0.503
CLCR_05638	GPD	A0A1C1C7B2	A0A1C1C7G6	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	Glyceraldehyde-3-phosphate dehydrogenase.	0.559
CLCR_05638	lcc2	A0A1C1C7B2	A0A1C1D2H0	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	Laccase-2.	0.452
CLCR_06356	CLCR_00456	A0A1C1C8F8	A0A1C1CC43	EF-hand domain-containing protein; Belongs to the calmodulin family.	Beta-1,3-glucan-binding protein.	0.518
CLCR_06356	CLCR_01196	A0A1C1C8F8	A0A1C1CD52	EF-hand domain-containing protein; Belongs to the calmodulin family.	Beta-1,3-glucan-binding protein.	0.518
CLCR_06356	CLCR_06489	A0A1C1C8F8	A0A1C1C8L0	EF-hand domain-containing protein; Belongs to the calmodulin family.	Calmodulin; Belongs to the calmodulin family.	0.873
CLCR_06356	CLCR_06974	A0A1C1C8F8	A0A1C1CMJ7	EF-hand domain-containing protein; Belongs to the calmodulin family.	Putative transporter.	0.430
CLCR_06356	GPD	A0A1C1C8F8	A0A1C1C7G6	EF-hand domain-containing protein; Belongs to the calmodulin family.	Glyceraldehyde-3-phosphate dehydrogenase.	0.400
CLCR_06356	lcc2	A0A1C1C8F8	A0A1C1D2H0	EF-hand domain-containing protein; Belongs to the calmodulin family.	Laccase-2.	0.460
CLCR_06489	CLCR_00456	A0A1C1C8L0	A0A1C1CC43	Calmodulin; Belongs to the calmodulin family.	Beta-1,3-glucan-binding protein.	0.518
CLCR_06489	CLCR_01196	A0A1C1C8L0	A0A1C1CD52	Calmodulin; Belongs to the calmodulin family.	Beta-1,3-glucan-binding protein.	0.518
CLCR_06489	CLCR_06356	A0A1C1C8L0	A0A1C1C8F8	Calmodulin; Belongs to the calmodulin family.	EF-hand domain-containing protein; Belongs to the calmodulin family.	0.873