STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCN5Histone acetyltransferase GCN5. (412 aa)    
Predicted Functional Partners:
ADA2
Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation.
    
 0.996
CLCR_06214
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 0.984
sgf73
SAGA-associated factor 73.
    
 0.982
CLCR_09941
Ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family.
    
 0.979
TRA1
Transcription-associated protein 1; Belongs to the PI3/PI4-kinase family.
    
 0.977
CLCR_03337
Putative transcriptional regulator Ngg1.
    
 0.977
CLCR_01795
Bromo domain-containing protein.
    
 
0.970
CLCR_04467
Uncharacterized protein.
    
 0.967
CLCR_06227
Transcription initiation factor TFIID, 31kD subunit.
   
 0.959
taf6
Transcription initiation factor TFIID subunit 6.
    
 0.953
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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