CLCR_06558 protein (Cladophialophora carrionii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CLCR_06558

Uncharacterized protein. (1396 aa)

Predicted Functional Partners:

nop56

0.805

CLCR_07113

0.802

NEW1

0.794

nop58

0.660

CLCR_00862

0.640

NUG1

0.633

CLCR_04930

0.630

esf2

0.625

CLCR_06248

0.606

PRP43

0.604

Your Current Organism:

Cladophialophora carrionii

NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLCR_00862	CLCR_04930	A0A1C1D154	A0A1C1CK19	Pin2-interacting protein X1.	Ribosome production factor 2 like protein.	0.664
CLCR_00862	CLCR_06248	A0A1C1D154	A0A1C1CA30	Pin2-interacting protein X1.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.590
CLCR_00862	CLCR_06558	A0A1C1D154	A0A1C1CN36	Pin2-interacting protein X1.	Uncharacterized protein.	0.640
CLCR_00862	CLCR_07113	A0A1C1D154	A0A1C1CP16	Pin2-interacting protein X1.	rRNA 2'-O-methyltransferase fibrillarin.	0.961
CLCR_00862	NUG1	A0A1C1D154	A0A1C1CNY2	Pin2-interacting protein X1.	Nuclear GTP-binding protein NUG1.	0.821
CLCR_00862	PRP43	A0A1C1D154	A0A1C1C9Y1	Pin2-interacting protein X1.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	0.973
CLCR_00862	esf2	A0A1C1D154	A0A1C1C7V0	Pin2-interacting protein X1.	Pre-rRNA-processing protein esf2.	0.648
CLCR_00862	nop58	A0A1C1D154	A0A1C1CEW3	Pin2-interacting protein X1.	Nucleolar protein 58.	0.782
CLCR_04930	CLCR_00862	A0A1C1CK19	A0A1C1D154	Ribosome production factor 2 like protein.	Pin2-interacting protein X1.	0.664
CLCR_04930	CLCR_06248	A0A1C1CK19	A0A1C1CA30	Ribosome production factor 2 like protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.996
CLCR_04930	CLCR_06558	A0A1C1CK19	A0A1C1CN36	Ribosome production factor 2 like protein.	Uncharacterized protein.	0.630
CLCR_04930	CLCR_07113	A0A1C1CK19	A0A1C1CP16	Ribosome production factor 2 like protein.	rRNA 2'-O-methyltransferase fibrillarin.	0.858
CLCR_04930	NEW1	A0A1C1CK19	A0A1C1CC82	Ribosome production factor 2 like protein.	[NU+] prion formation protein 1.	0.968
CLCR_04930	NUG1	A0A1C1CK19	A0A1C1CNY2	Ribosome production factor 2 like protein.	Nuclear GTP-binding protein NUG1.	0.995
CLCR_04930	PRP43	A0A1C1CK19	A0A1C1C9Y1	Ribosome production factor 2 like protein.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	0.924
CLCR_04930	esf2	A0A1C1CK19	A0A1C1C7V0	Ribosome production factor 2 like protein.	Pre-rRNA-processing protein esf2.	0.581
CLCR_04930	nop56	A0A1C1CK19	A0A1C1CR09	Ribosome production factor 2 like protein.	Nucleolar protein 56.	0.941
CLCR_04930	nop58	A0A1C1CK19	A0A1C1CEW3	Ribosome production factor 2 like protein.	Nucleolar protein 58.	0.931
CLCR_06248	CLCR_00862	A0A1C1CA30	A0A1C1D154	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Pin2-interacting protein X1.	0.590
CLCR_06248	CLCR_04930	A0A1C1CA30	A0A1C1CK19	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Ribosome production factor 2 like protein.	0.996