STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_07686Uncharacterized protein. (170 aa)    
Predicted Functional Partners:
spt3
SAGA complex subunit spt3.
    
  0.499
CLCR_05621
SUN domain-containing protein.
    
 0.472
sgf73
SAGA-associated factor 73.
    
 0.461
urk1
Uridine kinase; Belongs to the uridine kinase family.
    
 0.454
upp
Uracil phosphoribosyltransferase.
    
 0.454
FUR1
Uracil phosphoribosyltransferase.
    
 0.454
CLCR_03337
Putative transcriptional regulator Ngg1.
    
 0.450
TRA1
Transcription-associated protein 1; Belongs to the PI3/PI4-kinase family.
    
 0.449
CLCR_02251
Zn(2)-C6 fungal-type domain-containing protein.
    
  0.449
CLCR_08325
Transcription initiation factor TFIID subunit 12.
    
  0.437
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.