CLCR_07513 protein (Cladophialophora carrionii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CLCR_07513

NAD dependent epimerase/dehydratase. (268 aa)

Predicted Functional Partners:

RPB2

0.828

rpb3

0.819

RPB8

0.819

CLCR_01997

0.819

RPB5

0.819

rpb4

0.819

CLCR_05249

0.819

RPC10

0.819

spt4

0.816

sua7

0.813

Your Current Organism:

Cladophialophora carrionii

NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLCR_01997	CLCR_05249	A0A1C1CDM5	A0A1C1CK49	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerases I, II, and III.	0.999
CLCR_01997	CLCR_07513	A0A1C1CDM5	A0A1C1CNQ4	RNA_pol_L_2 domain-containing protein.	NAD dependent epimerase/dehydratase.	0.819
CLCR_01997	RPB2	A0A1C1CDM5	A0A1C1CM35	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
CLCR_01997	RPB5	A0A1C1CDM5	A0A1C1CF77	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.999
CLCR_01997	RPB8	A0A1C1CDM5	A0A1C1C9C3	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
CLCR_01997	RPC10	A0A1C1CDM5	A0A1C1CSW8	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.999
CLCR_01997	rpb3	A0A1C1CDM5	A0A1C1C971	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase II subunit RPB3.	0.999
CLCR_01997	rpb4	A0A1C1CDM5	A0A1C1CK38	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase II subunit rpb4.	0.999
CLCR_01997	spt4	A0A1C1CDM5	A0A1C1D352	RNA_pol_L_2 domain-containing protein.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.991
CLCR_01997	sua7	A0A1C1CDM5	A0A1C1CFP7	RNA_pol_L_2 domain-containing protein.	Transcription initiation factor IIB.	0.985
CLCR_05249	CLCR_01997	A0A1C1CK49	A0A1C1CDM5	DNA-directed RNA polymerases I, II, and III.	RNA_pol_L_2 domain-containing protein.	0.999
CLCR_05249	CLCR_07513	A0A1C1CK49	A0A1C1CNQ4	DNA-directed RNA polymerases I, II, and III.	NAD dependent epimerase/dehydratase.	0.819
CLCR_05249	RPB2	A0A1C1CK49	A0A1C1CM35	DNA-directed RNA polymerases I, II, and III.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
CLCR_05249	RPB5	A0A1C1CK49	A0A1C1CF77	DNA-directed RNA polymerases I, II, and III.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.999
CLCR_05249	RPB8	A0A1C1CK49	A0A1C1C9C3	DNA-directed RNA polymerases I, II, and III.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
CLCR_05249	RPC10	A0A1C1CK49	A0A1C1CSW8	DNA-directed RNA polymerases I, II, and III.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.999
CLCR_05249	rpb3	A0A1C1CK49	A0A1C1C971	DNA-directed RNA polymerases I, II, and III.	DNA-directed RNA polymerase II subunit RPB3.	0.999
CLCR_05249	rpb4	A0A1C1CK49	A0A1C1CK38	DNA-directed RNA polymerases I, II, and III.	DNA-directed RNA polymerase II subunit rpb4.	0.999
CLCR_05249	spt4	A0A1C1CK49	A0A1C1D352	DNA-directed RNA polymerases I, II, and III.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.987
CLCR_05249	sua7	A0A1C1CK49	A0A1C1CFP7	DNA-directed RNA polymerases I, II, and III.	Transcription initiation factor IIB.	0.987