STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_07547Uncharacterized protein. (249 aa)    
Predicted Functional Partners:
CLCR_08051
Topoisomerase family protein TRF4.
    
 
 0.546
CLCR_07910
RNA-dependent RNA polymerase.
    
 
 0.462
CLCR_09428
RNA-directed RNA polymerase.
    
 
 0.462
rdr1
RNA-dependent RNA polymerase.
    
 
 0.462
CLCR_03441
DNA polymerase sigma subunit.
    
 
 0.449
CLCR_10338
tRNA-specific adenosine deaminase.
   
  
 0.446
CLCR_01397
Putative RNA interference and protein silencing protein (Qde2).
    
 
 0.434
CLCR_07958
RNA interference and protein silencing protein.
    
 
 0.434
CLCR_03156
Uncharacterized protein.
    
 
 0.434
ago1
Protein argonaute; Belongs to the argonaute family.
    
 
 0.434
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.