STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_07265Putative SAM dependent methyltransferase. (338 aa)    
Predicted Functional Partners:
CLCR_08436
Uncharacterized protein.
   
  0.604
CLCR_03869
Ribosome biogenesis protein tsr1 like protein.
   
  0.601
rps6b
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
  0.587
CLCR_00708
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.586
rps1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
    
  0.586
ERG2
C-8 sterol isomerase.
   
 0.584
CLCR_07088
Low temperature viability protein.
   
  0.584
CLCR_11382
40S ribosomal protein S27.
    
  0.582
rps23
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
    
  0.579
nob1
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
  0.579
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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