Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CLCR_00946 | Prpf8 | A0A1C1D0U7 | A0A1C1CNQ0 | RNA recognition motif containing protein. | Pre-mRNA-processing-splicing factor 8. | 0.940 |
CLCR_00946 | SmE | A0A1C1D0U7 | A0A1C1C7Y4 | RNA recognition motif containing protein. | Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. | 0.996 |
CLCR_00946 | clf1 | A0A1C1D0U7 | A0A1C1CUZ1 | RNA recognition motif containing protein. | Pre-mRNA-splicing factor clf1. | 0.925 |
CLCR_00946 | cwc2 | A0A1C1D0U7 | A0A1C1CPZ8 | RNA recognition motif containing protein. | Pre-mRNA-splicing factor cwc2. | 0.989 |
CLCR_00946 | isy1 | A0A1C1D0U7 | A0A1C1C7A2 | RNA recognition motif containing protein. | Pre-mRNA-splicing factor isy1. | 0.846 |
CLCR_00946 | prp46 | A0A1C1D0U7 | A0A1C1C8W8 | RNA recognition motif containing protein. | Pre-mRNA-splicing factor prp46. | 0.982 |
CLCR_00946 | slt11 | A0A1C1D0U7 | A0A1C1CGE9 | RNA recognition motif containing protein. | Pre-mRNA-splicing factor slt11. | 0.924 |
CLCR_00946 | smd1 | A0A1C1D0U7 | A0A1C1CYG2 | RNA recognition motif containing protein. | Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. | 0.986 |
CLCR_00946 | syf1 | A0A1C1D0U7 | A0A1C1C9A4 | RNA recognition motif containing protein. | Pre-mRNA-splicing factor syf1. | 0.936 |
CLCR_00946 | syf2 | A0A1C1D0U7 | A0A1C1CZM4 | RNA recognition motif containing protein. | Pre-mRNA-splicing factor syf2. | 0.810 |
Prpf8 | CLCR_00946 | A0A1C1CNQ0 | A0A1C1D0U7 | Pre-mRNA-processing-splicing factor 8. | RNA recognition motif containing protein. | 0.940 |
Prpf8 | SmE | A0A1C1CNQ0 | A0A1C1C7Y4 | Pre-mRNA-processing-splicing factor 8. | Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. | 0.995 |
Prpf8 | clf1 | A0A1C1CNQ0 | A0A1C1CUZ1 | Pre-mRNA-processing-splicing factor 8. | Pre-mRNA-splicing factor clf1. | 0.990 |
Prpf8 | cwc2 | A0A1C1CNQ0 | A0A1C1CPZ8 | Pre-mRNA-processing-splicing factor 8. | Pre-mRNA-splicing factor cwc2. | 0.989 |
Prpf8 | isy1 | A0A1C1CNQ0 | A0A1C1C7A2 | Pre-mRNA-processing-splicing factor 8. | Pre-mRNA-splicing factor isy1. | 0.990 |
Prpf8 | prp46 | A0A1C1CNQ0 | A0A1C1C8W8 | Pre-mRNA-processing-splicing factor 8. | Pre-mRNA-splicing factor prp46. | 0.989 |
Prpf8 | slt11 | A0A1C1CNQ0 | A0A1C1CGE9 | Pre-mRNA-processing-splicing factor 8. | Pre-mRNA-splicing factor slt11. | 0.989 |
Prpf8 | smd1 | A0A1C1CNQ0 | A0A1C1CYG2 | Pre-mRNA-processing-splicing factor 8. | Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. | 0.995 |
Prpf8 | syf1 | A0A1C1CNQ0 | A0A1C1C9A4 | Pre-mRNA-processing-splicing factor 8. | Pre-mRNA-splicing factor syf1. | 0.989 |
Prpf8 | syf2 | A0A1C1CNQ0 | A0A1C1CZM4 | Pre-mRNA-processing-splicing factor 8. | Pre-mRNA-splicing factor syf2. | 0.961 |
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