STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_07311C2H2-type domain-containing protein. (380 aa)    
Predicted Functional Partners:
cwf29
U2 snRNP component ist3.
   
   0.863
rse1
Pre-mRNA-splicing factor rse1.
    
   0.836
prp10
U2 snRNP component prp10.
    
   0.836
CLCR_07242
Uncharacterized protein.
    
 0.823
sap62
Pre-mRNA-splicing factor sap62.
    
 
 0.816
sap61
Pre-mRNA-splicing factor sap61.
    
 
 0.815
fuy1
UTP--glucose-1-phosphate uridylyltransferase.
 
      0.784
CLCR_06210
Putative RNA binding protein.
   
   0.746
cwc26
Pre-mRNA-splicing factor cwc26.
   
   0.746
CLCR_04547
Nuclear ribonucleoprotein.
    
   0.727
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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