STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lys4Homoaconitase, mitochondrial; Catalyzes the reversible hydration of cis-homoaconitate to (2R,3S)-homoisocitrate, a step in the alpha-aminoadipate pathway for lysine biosynthesis. (828 aa)    
Predicted Functional Partners:
LYS12
Homoisocitrate dehydrogenase, mitochondrial.
 
 0.955
CLCR_08045
Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.
   
 
 
0.918
citA
Citrate synthase; Belongs to the citrate synthase family.
  
 0.892
mcsA
Citrate synthase; Belongs to the citrate synthase family.
  
 0.892
CLCR_02022
Ulp1 protease family protein.
  
 
 0.885
CLCR_07277
Putative cytochrome c import factor (Cyc2).
 
      0.875
CLCR_03577
Uncharacterized protein.
  
 0.856
icdA
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.856
IDH1
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
 0.787
KGD1
2-oxoglutarate dehydrogenase, mitochondrial.
  
 
 0.759
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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