STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_08902NmrA-like family protein. (309 aa)    
Predicted Functional Partners:
CLCR_02625
RRM domain-containing protein.
    
 0.561
CLCR_03682
Putative pre-mRNA-splicing factor srp1.
    
 0.561
CLCR_05903
RRM domain-containing protein.
    
 0.428
cef1
Pre-mRNA-splicing factor cef1.
    
   0.422
CLCR_04196
Isochorismatase hydrolase.
    
   0.422
rsd1
RNA-binding protein rsd1.
    
 
 0.418
CLCR_03529
C3H1-type domain-containing protein.
    
 0.401
CLCR_09835
R3H domain containing protein.
    
 0.401
CLCR_10573
RNA recognition motif containing protein.
    
 0.401
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
Server load: low (20%) [HD]