STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MSP1Protein MSP1; Belongs to the AAA ATPase family. (410 aa)    
Predicted Functional Partners:
NPL4
Nuclear protein localization protein 4.
   
 0.848
sec17
Putative vesicular-fusion protein sec17 like protein.
    
 0.846
ubx2
UBX domain-containing protein 2.
    
 0.830
VPS24
Vacuolar protein-sorting-associated protein 24.
   
 0.822
CLCR_08553
Putative peroxisomal membrane protein receptor Pex19.
    
 0.822
CLCR_02493
Putative peroxisomal membrane anchor protein (Pex14).
    
 0.803
CLCR_04859
Peroxisomal docking factor component Pex13-Penicillium chrysogenum.
    
 0.800
PEX12
Peroxisome assembly protein 12.
    
 0.798
ubx1
UBX domain-containing protein 1.
   
 0.787
otu1
Putative ubiquitin thioesterase otu1.
    
 0.787
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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