STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPS16B40S ribosomal protein S16-B; Belongs to the universal ribosomal protein uS9 family. (143 aa)    
Predicted Functional Partners:
CLCR_00708
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
 0.999
RPS4
40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.
   
 0.999
Rpl23
60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
  
 0.999
RPL26A
60S ribosomal protein L26-1.
  
 0.999
CLCR_11218
60S ribosomal protein L32.
   
 0.999
CLCR_11219
40S ribosomal protein S29.
  
 0.999
rpl36
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
   
 0.999
rps3
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
  
 0.999
CLCR_00525
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
   
 0.999
CLCR_02130
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
 0.999
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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