STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_07960Putative WD repeat-containing protein. (1018 aa)    
Predicted Functional Partners:
UTP6
U3 small nucleolar RNA-associated protein 6.
   
 0.999
NEW1
[NU+] prion formation protein 1.
   
   0.999
UTP18
U3 small nucleolar RNA-associated protein 18.
   
 0.999
CLCR_01808
U3 small nucleolar RNA-associated protein.
   
 0.999
CLCR_03270
U3 small nucleolar RNA-associated protein 22.
   
 0.999
CLCR_03842
Putative small nucleolar ribonucleoprotein complex component (Utp5).
   
 0.999
utp10
U3 small nucleolar RNA-associated protein 10.
   
 0.999
CLCR_07973
Putative WD repeat-containing protein.
   
 0.999
CLCR_09573
Periodic tryptophan protein 2 like protein.
   
 0.999
utp15
U3 small nucleolar RNA-associated protein 15.
  
 0.999
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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