STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atg6Vacuolar protein sorting-associated protein atg6. (520 aa)    
Predicted Functional Partners:
VPS34
Phosphatidylinositol 3-kinase VPS34.
    
 0.999
CLCR_05348
Putative kinase with calcium binding domain.
    
 0.999
CLCR_05618
Putative UV radiation resistance protein (UVRAG).
    
 0.999
atg1
Serine/threonine-protein kinase atg1.
    
 0.997
ubp14
Ubiquitin carboxyl-terminal hydrolase.
     
 0.982
CLCR_03082
DUF1649 domain protein.
    
 0.901
ATG8
Autophagy-related protein.
    
 0.900
atg3
Autophagy-related protein 3.
   
 0.896
atg12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.
   
 0.890
atg18
Autophagy-related protein 18.
    
 0.884
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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