STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_08483Gamma-butyrobetaine dioxygenase. (497 aa)    
Predicted Functional Partners:
NIAD
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
   
 
 0.790
RDL2
Sulfurtransferase.
     
 0.673
CLCR_03447
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.652
Aldh3b1
Aldehyde dehydrogenase family 3 member B1.
   
 0.652
CLCR_03668
NAD(P)H-dependent FMN reductase.
   
 
  0.622
MET5
Sulfite reductase [NADPH] subunit beta.
     
 0.604
TOXF
Putative branched-chain-amino-acid aminotransferase TOXF.
   
 
  0.550
BAT1-3
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
   
 
  0.550
BAT1-4
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
   
 
  0.550
CLCR_08696
Uncharacterized protein.
   
 
  0.550
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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