CLCR_11361 protein (Cladophialophora carrionii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CLCR_11361

Putative MFS transporter. (963 aa)

Predicted Functional Partners:

CLCR_06167

0.751

UBI4

0.751

CLCR_03031

0.740

CLCR_03993

0.738

pcn1

0.738

CLCR_02357

0.736

MRPL19

0.734

rplC

0.733

CLCR_08814

0.726

CLCR_10902

0.726

Your Current Organism:

Cladophialophora carrionii

NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLCR_02357	CLCR_06167	A0A1C1CFJ0	A0A1C1CA36	Baculoviral IAP repeat-containing 2/3/4.	Ubiquitin-like domain-containing protein.	0.850
CLCR_02357	CLCR_08814	A0A1C1CFJ0	A0A1C1CUC4	Baculoviral IAP repeat-containing 2/3/4.	BZIP domain-containing protein.	0.880
CLCR_02357	CLCR_10902	A0A1C1CFJ0	A0A1C1CWR2	Baculoviral IAP repeat-containing 2/3/4.	Ubiquitin-40S ribosomal protein S27a.	0.880
CLCR_02357	CLCR_11361	A0A1C1CFJ0	A0A1C1CSR5	Baculoviral IAP repeat-containing 2/3/4.	Putative MFS transporter.	0.736
CLCR_02357	UBI4	A0A1C1CFJ0	A0A1C1CKG7	Baculoviral IAP repeat-containing 2/3/4.	Polyubiquitin.	0.919
CLCR_03031	CLCR_11361	A0A1C1D288	A0A1C1CSR5	37S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.	Putative MFS transporter.	0.740
CLCR_03031	MRPL19	A0A1C1D288	A0A1C1C776	37S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.	54S ribosomal protein L19, mitochondrial; Belongs to the universal ribosomal protein uL11 family.	0.998
CLCR_03031	rplC	A0A1C1D288	A0A1C1CSY9	37S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.	50S ribosomal protein L3.	0.999
CLCR_03993	CLCR_06167	A0A1C1CIN9	A0A1C1CA36	Vezatin domain-containing protein.	Ubiquitin-like domain-containing protein.	0.861
CLCR_03993	CLCR_08814	A0A1C1CIN9	A0A1C1CUC4	Vezatin domain-containing protein.	BZIP domain-containing protein.	0.895
CLCR_03993	CLCR_10902	A0A1C1CIN9	A0A1C1CWR2	Vezatin domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.895
CLCR_03993	CLCR_11361	A0A1C1CIN9	A0A1C1CSR5	Vezatin domain-containing protein.	Putative MFS transporter.	0.738
CLCR_03993	UBI4	A0A1C1CIN9	A0A1C1CKG7	Vezatin domain-containing protein.	Polyubiquitin.	0.912
CLCR_03993	pcn1	A0A1C1CIN9	A0A1C1CIW0	Vezatin domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.900
CLCR_06167	CLCR_02357	A0A1C1CA36	A0A1C1CFJ0	Ubiquitin-like domain-containing protein.	Baculoviral IAP repeat-containing 2/3/4.	0.850
CLCR_06167	CLCR_03993	A0A1C1CA36	A0A1C1CIN9	Ubiquitin-like domain-containing protein.	Vezatin domain-containing protein.	0.861
CLCR_06167	CLCR_08814	A0A1C1CA36	A0A1C1CUC4	Ubiquitin-like domain-containing protein.	BZIP domain-containing protein.	0.924
CLCR_06167	CLCR_10902	A0A1C1CA36	A0A1C1CWR2	Ubiquitin-like domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.924
CLCR_06167	CLCR_11361	A0A1C1CA36	A0A1C1CSR5	Ubiquitin-like domain-containing protein.	Putative MFS transporter.	0.751
CLCR_06167	MRPL19	A0A1C1CA36	A0A1C1C776	Ubiquitin-like domain-containing protein.	54S ribosomal protein L19, mitochondrial; Belongs to the universal ribosomal protein uL11 family.	0.766