STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLCR_08102Uncharacterized protein. (747 aa)    
Predicted Functional Partners:
CLCR_08412
WD domain, G-beta repeat containing protein.
   
  0.597
ipi1
Pre-rRNA-processing protein ipi1.
    
 0.587
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
  0.510
CLCR_09758
CLP1_P domain-containing protein.
    
  0.474
CLCR_09000
40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
    
  0.466
NUG1
Nuclear GTP-binding protein NUG1.
   
  0.452
erb1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
  0.448
CLCR_02912
Uncharacterized protein.
    
  0.444
RML2
54S ribosomal protein RML2, mitochondrial.
    
  0.441
CLCR_05002
Putative calmodulin.
    
 0.439
Your Current Organism:
Cladophialophora carrionii
NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii
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