CLCR_10030 protein (Cladophialophora carrionii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CLCR_10030

Uncharacterized protein. (544 aa)

Predicted Functional Partners:

CLCR_10695

0.470

CLCR_00057

0.422

CLCR_05878

0.414

CLCR_02898

0.405

CLCR_07946

0.401

Your Current Organism:

Cladophialophora carrionii

NCBI taxonomy Id: 86049
Other names: C. carrionii, CBS 160.54, Cladosporium carrionii

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLCR_00057	CLCR_10030	A0A1C1CBG8	A0A1C1CY49	Uncharacterized protein.	Uncharacterized protein.	0.422
CLCR_02898	CLCR_07946	A0A1C1D1N1	A0A1C1CS13	Uncharacterized protein.	Uncharacterized protein.	0.516
CLCR_02898	CLCR_10030	A0A1C1D1N1	A0A1C1CY49	Uncharacterized protein.	Uncharacterized protein.	0.405
CLCR_05878	CLCR_10030	A0A1C1C975	A0A1C1CY49	Uncharacterized protein.	Uncharacterized protein.	0.414
CLCR_07946	CLCR_02898	A0A1C1CS13	A0A1C1D1N1	Uncharacterized protein.	Uncharacterized protein.	0.516
CLCR_07946	CLCR_10030	A0A1C1CS13	A0A1C1CY49	Uncharacterized protein.	Uncharacterized protein.	0.401
CLCR_10030	CLCR_00057	A0A1C1CY49	A0A1C1CBG8	Uncharacterized protein.	Uncharacterized protein.	0.422
CLCR_10030	CLCR_02898	A0A1C1CY49	A0A1C1D1N1	Uncharacterized protein.	Uncharacterized protein.	0.405
CLCR_10030	CLCR_05878	A0A1C1CY49	A0A1C1C975	Uncharacterized protein.	Uncharacterized protein.	0.414
CLCR_10030	CLCR_07946	A0A1C1CY49	A0A1C1CS13	Uncharacterized protein.	Uncharacterized protein.	0.401
CLCR_10030	CLCR_10695	A0A1C1CY49	A0A1C1CW28	Uncharacterized protein.	Uncharacterized protein.	0.470
CLCR_10695	CLCR_10030	A0A1C1CW28	A0A1C1CY49	Uncharacterized protein.	Uncharacterized protein.	0.470