STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT36990.1YfcL protein. (94 aa)    
Predicted Functional Partners:
SFT69386.1
Group 4 capsule polysaccharide lipoprotein gfcB, YjbF.
  
     0.747
seqA
Negative regulator of replication initiation SeqA; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
  
     0.732
SFT57016.1
Hypothetical protein.
  
     0.661
SFT36966.1
Flavodoxin II; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
       0.620
SFT36949.1
Protein of unknown function.
       0.600
SFT41860.1
Hypothetical protein.
  
     0.596
fadR
Transcriptional regulator, GntR family; Multifunctional regulator of fatty acid metabolism.
  
     0.578
priB
Restart primosome assembly protein PriB; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
  
     0.559
SFT44911.1
Hypothetical protein.
  
     0.550
SFT57113.1
Two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ.
  
     0.540
Your Current Organism:
Idiomarina abyssalis
NCBI taxonomy Id: 86102
Other names: ATCC BAA-312, I. abyssalis, Idiomarina abyssalis Ivanova et al. 2000, KMM 227, marine bacterium KM227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.