Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFT38271.1 | SFT38316.1 | SAMN04515657_0213 | SAMN04515657_0216 | DNA polymerase III, delta subunit. | Hypothetical protein. | 0.644 |
SFT38271.1 | SFT38348.1 | SAMN04515657_0213 | SAMN04515657_0218 | DNA polymerase III, delta subunit. | Magnesium and cobalt transporter. | 0.610 |
SFT38271.1 | SFT38379.1 | SAMN04515657_0213 | SAMN04515657_0220 | DNA polymerase III, delta subunit. | Phosphate starvation-inducible protein PhoH. | 0.542 |
SFT38271.1 | lnt | SAMN04515657_0213 | SAMN04515657_0217 | DNA polymerase III, delta subunit. | Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. | 0.582 |
SFT38271.1 | lptE | SAMN04515657_0213 | SAMN04515657_0214 | DNA polymerase III, delta subunit. | LPS-assembly lipoprotein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane. | 0.848 |
SFT38271.1 | miaB | SAMN04515657_0213 | SAMN04515657_0221 | DNA polymerase III, delta subunit. | tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.570 |
SFT38271.1 | rlpA | SAMN04515657_0213 | SAMN04515657_0206 | DNA polymerase III, delta subunit. | Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | 0.631 |
SFT38271.1 | ybeY | SAMN04515657_0213 | SAMN04515657_0219 | DNA polymerase III, delta subunit. | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.537 |
SFT38316.1 | SFT38271.1 | SAMN04515657_0216 | SAMN04515657_0213 | Hypothetical protein. | DNA polymerase III, delta subunit. | 0.644 |
SFT38316.1 | SFT38348.1 | SAMN04515657_0216 | SAMN04515657_0218 | Hypothetical protein. | Magnesium and cobalt transporter. | 0.653 |
SFT38316.1 | SFT38379.1 | SAMN04515657_0216 | SAMN04515657_0220 | Hypothetical protein. | Phosphate starvation-inducible protein PhoH. | 0.616 |
SFT38316.1 | SFT38413.1 | SAMN04515657_0216 | SAMN04515657_0222 | Hypothetical protein. | Threonine/homoserine efflux transporter RhtA. | 0.479 |
SFT38316.1 | lnt | SAMN04515657_0216 | SAMN04515657_0217 | Hypothetical protein. | Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. | 0.699 |
SFT38316.1 | lptE | SAMN04515657_0216 | SAMN04515657_0214 | Hypothetical protein. | LPS-assembly lipoprotein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane. | 0.658 |
SFT38316.1 | miaB | SAMN04515657_0216 | SAMN04515657_0221 | Hypothetical protein. | tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.602 |
SFT38316.1 | rlpA | SAMN04515657_0216 | SAMN04515657_0206 | Hypothetical protein. | Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. | 0.493 |
SFT38316.1 | ybeY | SAMN04515657_0216 | SAMN04515657_0219 | Hypothetical protein. | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.616 |
SFT38348.1 | SFT38271.1 | SAMN04515657_0218 | SAMN04515657_0213 | Magnesium and cobalt transporter. | DNA polymerase III, delta subunit. | 0.610 |
SFT38348.1 | SFT38316.1 | SAMN04515657_0218 | SAMN04515657_0216 | Magnesium and cobalt transporter. | Hypothetical protein. | 0.653 |
SFT38348.1 | SFT38379.1 | SAMN04515657_0218 | SAMN04515657_0220 | Magnesium and cobalt transporter. | Phosphate starvation-inducible protein PhoH. | 0.898 |
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