STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT40458.1Peptidoglycan-binding protein, CsiV. (365 aa)    
Predicted Functional Partners:
SFT40499.1
Hypothetical protein.
 
     0.870
SFT40416.1
Hypothetical protein.
       0.830
SFT40442.1
DNA-binding transcriptional regulator, MarR family.
       0.830
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.786
SFT70184.1
Protein of unknown function.
  
     0.773
SFT38068.1
Hypothetical protein.
  
     0.756
SFT42557.1
Cysteine-rich CPXCG.
  
     0.754
SFT41452.1
Protein of unknown function.
  
     0.752
SFT78218.1
Type II secretion system protein N (GspN).
  
     0.748
SFT48835.1
Protein of unknown function.
  
     0.747
Your Current Organism:
Idiomarina abyssalis
NCBI taxonomy Id: 86102
Other names: ATCC BAA-312, I. abyssalis, Idiomarina abyssalis Ivanova et al. 2000, KMM 227, marine bacterium KM227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.