STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT40940.1Hypothetical protein. (58 aa)    
Predicted Functional Partners:
SFT40960.1
Kelch motif-containing protein.
 
     0.601
SFT60714.1
MotA/TolQ/ExbB proton channel family protein.
  
     0.598
SFT88342.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.587
SFT60693.1
Hypothetical protein.
  
     0.564
SFT60679.1
Hypothetical protein.
  
     0.553
SFT47712.1
Hypothetical protein.
  
     0.533
SFT82717.1
Protein of unknown function.
  
     0.500
SFT49000.1
Protein of unknown function.
  
     0.499
SFT47482.1
Uncharacterized conserved protein, MAPEG superfamily.
  
     0.473
SFT46628.1
Hypothetical protein.
  
     0.458
Your Current Organism:
Idiomarina abyssalis
NCBI taxonomy Id: 86102
Other names: ATCC BAA-312, I. abyssalis, Idiomarina abyssalis Ivanova et al. 2000, KMM 227, marine bacterium KM227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.