STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT42102.1Hypothetical protein. (126 aa)    
Predicted Functional Partners:
SFT52703.1
Hypothetical protein.
 
  
 0.844
SFT52720.1
Hypothetical protein.
 
  
 0.773
SFT74030.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.654
SFT42131.1
Voltage-gated sodium channel.
 
     0.626
SFT42088.1
Aspartate kinase; Belongs to the aspartokinase family.
       0.551
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
       0.545
SFT52738.1
Hypothetical protein.
 
     0.543
SFT73251.1
Predicted methyltransferase.
  
     0.534
SFT42147.1
Hypothetical protein.
       0.531
SFT59457.1
Tetratricopeptide repeat-containing protein.
  
     0.510
Your Current Organism:
Idiomarina abyssalis
NCBI taxonomy Id: 86102
Other names: ATCC BAA-312, I. abyssalis, Idiomarina abyssalis Ivanova et al. 2000, KMM 227, marine bacterium KM227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.