STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT48870.1Acetyltransferase (GNAT) domain-containing protein. (226 aa)    
Predicted Functional Partners:
SFT48889.1
Protein of unknown function.
 
     0.919
SFT48850.1
Hypothetical protein.
  
    0.824
SFT47712.1
Hypothetical protein.
  
     0.772
SFT44628.1
Protein of unknown function.
  
     0.770
SFT44929.1
Hypothetical protein.
  
     0.769
SFT46628.1
Hypothetical protein.
  
     0.761
SFT49000.1
Protein of unknown function.
 
     0.756
SFT48835.1
Protein of unknown function.
  
     0.744
SFT38068.1
Hypothetical protein.
  
     0.730
SFT73068.1
Primosomal replication protein priC.
  
     0.712
Your Current Organism:
Idiomarina abyssalis
NCBI taxonomy Id: 86102
Other names: ATCC BAA-312, I. abyssalis, Idiomarina abyssalis Ivanova et al. 2000, KMM 227, marine bacterium KM227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.