STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmM23S rRNA (cytidine2498-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. (369 aa)    
Predicted Functional Partners:
SFT49076.1
Uncharacterized membrane protein YgdD, TMEM256/DUF423 family.
  
  
 0.922
SFT49092.1
Hypothetical protein.
       0.853
SFT49114.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.853
SFT49132.1
3-oxoacyl-[acyl-carrier protein] reductase.
       0.717
SFT49152.1
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
       0.698
SFT49169.1
Enoyl-CoA hydratase/isomerase.
       0.665
SFT45924.1
Nucleoid-associated protein.
  
    0.646
SFT49189.1
Hypothetical protein.
       0.635
SFT49233.1
Carboxylate/amino acid/amine transporter.
 
     0.624
SFT49209.1
Methylmalonate-semialdehyde dehydrogenase [acylating].
       0.609
Your Current Organism:
Idiomarina abyssalis
NCBI taxonomy Id: 86102
Other names: ATCC BAA-312, I. abyssalis, Idiomarina abyssalis Ivanova et al. 2000, KMM 227, marine bacterium KM227
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.