STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT69790.1LPS O-antigen chain length determinant protein, WzzB/FepE family. (328 aa)    
Predicted Functional Partners:
SFT69427.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
 
 0.993
SFT69479.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
  
 
 0.970
SFT69351.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
 
 0.796
SFT69606.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
  
 0.757
SFT36425.1
Capsule assembly protein Wzi.
 
   
 0.657
SFT69769.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
     
 0.644
SFT69737.1
Glucose-1-phosphate thymidylyltransferase.
     
 0.642
SFT69751.1
dTDP-4-dehydrorhamnose reductase.
  
    0.641
SFT69722.1
dTDP-4-dehydrorhamnose 3,5-epimerase.
     
 0.635
SFT46522.1
ATP-binding protein involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.633
Your Current Organism:
Idiomarina abyssalis
NCBI taxonomy Id: 86102
Other names: ATCC BAA-312, I. abyssalis, Idiomarina abyssalis Ivanova et al. 2000, KMM 227, marine bacterium KM227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.