STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT71556.1Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain. (619 aa)    
Predicted Functional Partners:
SFT71456.1
Microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62.
     
 0.615
SFT71500.1
Septum formation protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.610
SFT71514.1
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
       0.610
SFT71479.1
TIGR02099 family protein.
       0.608
SFT71528.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.607
SFT71540.1
Rod shape-determining protein MreB.
       0.607
SFT71489.1
RNAse G.
       0.604
SFT71468.1
Predicted amidohydrolase.
       0.602
SFT66080.1
Dimethylhistidine N-methyltransferase.
  
 
 0.560
SFT71564.1
MSHA biogenesis protein MshQ.
 
     0.545
Your Current Organism:
Idiomarina abyssalis
NCBI taxonomy Id: 86102
Other names: ATCC BAA-312, I. abyssalis, Idiomarina abyssalis Ivanova et al. 2000, KMM 227, marine bacterium KM227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.