STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT71938.1Hypothetical protein. (676 aa)    
Predicted Functional Partners:
SFT71951.1
Hypothetical protein.
 
     0.953
SFT71964.1
Phage integrase family protein.
 
     0.943
SFT71930.1
Hypothetical protein.
       0.801
SFT83907.1
Antitoxin VapB.
  
     0.545
SFT71977.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
       0.528
SFT88910.1
Helix-turn-helix domain-containing protein.
  
     0.496
SFT83930.1
tRNA(fMet)-specific endonuclease VapC.
  
     0.430
SFT71986.1
Predicted arabinose efflux permease, MFS family.
       0.416
Your Current Organism:
Idiomarina abyssalis
NCBI taxonomy Id: 86102
Other names: ATCC BAA-312, I. abyssalis, Idiomarina abyssalis Ivanova et al. 2000, KMM 227, marine bacterium KM227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.