STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT78002.1Type II secretion system protein F (GspF). (408 aa)    
Predicted Functional Partners:
SFT77978.1
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.988
SFT78025.1
Type II secretion system protein G (GspG).
 
  
 0.968
SFT77955.1
General secretion pathway protein D.
 
  
 0.960
SFT78050.1
Type II secretion system protein H (GspH).
 
  
 0.930
SFT78080.1
General secretion pathway protein I.
 
  
 0.930
SFT70781.1
Protein transport protein HofB.
 
 
 0.928
SFT71691.1
MSHA biogenesis protein MshE.
 
 
 0.928
SFT78110.1
Type II secretion system protein J (GspJ).
 
  
 0.900
SFT78137.1
Type II secretion system protein K (GspK).
 
   
 0.886
SFT77928.1
Type II secretion system protein C (GspC).
 
  
 0.873
Your Current Organism:
Idiomarina abyssalis
NCBI taxonomy Id: 86102
Other names: ATCC BAA-312, I. abyssalis, Idiomarina abyssalis Ivanova et al. 2000, KMM 227, marine bacterium KM227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.