Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFT37163.1 | SFT84732.1 | SAMN04515657_0140 | SAMN04515657_2403 | DedD protein. | Hypothetical protein. | 0.416 |
SFT37163.1 | SFT84829.1 | SAMN04515657_0140 | SAMN04515657_2408 | DedD protein. | Uroporphyrin-3 C-methyltransferase. | 0.589 |
SFT37163.1 | SFT84846.1 | SAMN04515657_0140 | SAMN04515657_2409 | DedD protein. | HemY protein. | 0.555 |
SFT71085.1 | SFT84846.1 | SAMN04515657_1838 | SAMN04515657_2409 | Hypothetical protein. | HemY protein. | 0.655 |
SFT79620.1 | SFT84829.1 | SAMN04515657_2223 | SAMN04515657_2408 | DNA polymerase III, chi subunit. | Uroporphyrin-3 C-methyltransferase. | 0.428 |
SFT79620.1 | SFT84846.1 | SAMN04515657_2223 | SAMN04515657_2409 | DNA polymerase III, chi subunit. | HemY protein. | 0.546 |
SFT84732.1 | SFT37163.1 | SAMN04515657_2403 | SAMN04515657_0140 | Hypothetical protein. | DedD protein. | 0.416 |
SFT84732.1 | SFT84808.1 | SAMN04515657_2403 | SAMN04515657_2407 | Hypothetical protein. | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | 0.710 |
SFT84732.1 | SFT84829.1 | SAMN04515657_2403 | SAMN04515657_2408 | Hypothetical protein. | Uroporphyrin-3 C-methyltransferase. | 0.618 |
SFT84732.1 | SFT84846.1 | SAMN04515657_2403 | SAMN04515657_2409 | Hypothetical protein. | HemY protein. | 0.670 |
SFT84732.1 | hemC | SAMN04515657_2403 | SAMN04515657_2406 | Hypothetical protein. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.574 |
SFT84808.1 | SFT84732.1 | SAMN04515657_2407 | SAMN04515657_2403 | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Hypothetical protein. | 0.710 |
SFT84808.1 | SFT84829.1 | SAMN04515657_2407 | SAMN04515657_2408 | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Uroporphyrin-3 C-methyltransferase. | 0.974 |
SFT84808.1 | SFT84846.1 | SAMN04515657_2407 | SAMN04515657_2409 | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | HemY protein. | 0.912 |
SFT84808.1 | hemC | SAMN04515657_2407 | SAMN04515657_2406 | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.994 |
SFT84808.1 | hemF | SAMN04515657_2407 | SAMN04515657_1518 | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Coproporphyrinogen oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX. | 0.439 |
SFT84808.1 | hemH | SAMN04515657_2407 | SAMN04515657_1995 | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.470 |
SFT84829.1 | SFT37163.1 | SAMN04515657_2408 | SAMN04515657_0140 | Uroporphyrin-3 C-methyltransferase. | DedD protein. | 0.589 |
SFT84829.1 | SFT79620.1 | SAMN04515657_2408 | SAMN04515657_2223 | Uroporphyrin-3 C-methyltransferase. | DNA polymerase III, chi subunit. | 0.428 |
SFT84829.1 | SFT84732.1 | SAMN04515657_2408 | SAMN04515657_2403 | Uroporphyrin-3 C-methyltransferase. | Hypothetical protein. | 0.618 |
page 1 of 3