Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFT71489.1 | SFT87638.1 | SAMN04515657_1877 | SAMN04515657_2537 | RNAse G. | Ribonuclease BN, tRNA processing enzyme. | 0.576 |
SFT71489.1 | rnpA | SAMN04515657_1877 | SAMN04515657_1494 | RNAse G. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.756 |
SFT71489.1 | rnr | SAMN04515657_1877 | SAMN04515657_2229 | RNAse G. | RNAse R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.670 |
SFT71489.1 | rph | SAMN04515657_1877 | SAMN04515657_2099 | RNAse G. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.670 |
SFT87614.1 | SFT87623.1 | SAMN04515657_2535 | SAMN04515657_2536 | Cu+-exporting ATPase. | Protein of unknown function. | 0.773 |
SFT87614.1 | SFT87638.1 | SAMN04515657_2535 | SAMN04515657_2537 | Cu+-exporting ATPase. | Ribonuclease BN, tRNA processing enzyme. | 0.555 |
SFT87614.1 | murI | SAMN04515657_2535 | SAMN04515657_2534 | Cu+-exporting ATPase. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.773 |
SFT87623.1 | SFT87614.1 | SAMN04515657_2536 | SAMN04515657_2535 | Protein of unknown function. | Cu+-exporting ATPase. | 0.773 |
SFT87623.1 | SFT87638.1 | SAMN04515657_2536 | SAMN04515657_2537 | Protein of unknown function. | Ribonuclease BN, tRNA processing enzyme. | 0.565 |
SFT87623.1 | murI | SAMN04515657_2536 | SAMN04515657_2534 | Protein of unknown function. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.816 |
SFT87638.1 | SFT71489.1 | SAMN04515657_2537 | SAMN04515657_1877 | Ribonuclease BN, tRNA processing enzyme. | RNAse G. | 0.576 |
SFT87638.1 | SFT87614.1 | SAMN04515657_2537 | SAMN04515657_2535 | Ribonuclease BN, tRNA processing enzyme. | Cu+-exporting ATPase. | 0.555 |
SFT87638.1 | SFT87623.1 | SAMN04515657_2537 | SAMN04515657_2536 | Ribonuclease BN, tRNA processing enzyme. | Protein of unknown function. | 0.565 |
SFT87638.1 | murI | SAMN04515657_2537 | SAMN04515657_2534 | Ribonuclease BN, tRNA processing enzyme. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.611 |
SFT87638.1 | rne | SAMN04515657_2537 | SAMN04515657_0511 | Ribonuclease BN, tRNA processing enzyme. | RNAse E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. | 0.576 |
SFT87638.1 | rnhB | SAMN04515657_2537 | SAMN04515657_0876 | Ribonuclease BN, tRNA processing enzyme. | RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.424 |
SFT87638.1 | rnpA | SAMN04515657_2537 | SAMN04515657_1494 | Ribonuclease BN, tRNA processing enzyme. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.659 |
SFT87638.1 | rnr | SAMN04515657_2537 | SAMN04515657_2229 | Ribonuclease BN, tRNA processing enzyme. | RNAse R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.467 |
SFT87638.1 | rph | SAMN04515657_2537 | SAMN04515657_2099 | Ribonuclease BN, tRNA processing enzyme. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.531 |
SFT87638.1 | ybeY | SAMN04515657_2537 | SAMN04515657_0219 | Ribonuclease BN, tRNA processing enzyme. | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.441 |
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