STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT88823.1Carboxypeptidase regulatory-like domain-containing protein. (1043 aa)    
Predicted Functional Partners:
SFT60106.1
Iron complex outermembrane recepter protein.
  
 
  0.724
SFT64271.1
Iron complex outermembrane recepter protein.
  
  
 0.666
SFT52751.1
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
  0.622
SFT88481.1
Iron complex outermembrane recepter protein.
  
     0.617
SFT36866.1
PA domain-containing protein.
  
     0.594
SFT64354.1
TonB-dependent Receptor Plug Domain.
  
     0.591
SFT88366.1
TonB-dependent Receptor Plug Domain.
  
     0.570
SFT42346.1
Hypothetical protein.
  
     0.562
SFT46685.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
  
     0.554
SFT46422.1
Zn-dependent amino-or carboxypeptidase, M28 family.
  
     0.551
Your Current Organism:
Idiomarina abyssalis
NCBI taxonomy Id: 86102
Other names: ATCC BAA-312, I. abyssalis, Idiomarina abyssalis Ivanova et al. 2000, KMM 227, marine bacterium KM227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.