STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT88834.1Endonuclease/Exonuclease/phosphatase family protein. (387 aa)    
Predicted Functional Partners:
SFT41843.1
PTS system, glucose-specific IIA component.
  
 
 0.946
SFT66779.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.939
SFT40416.1
Hypothetical protein.
 
     0.728
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.623
SFT42007.1
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase.
  
 
  0.612
SFT88845.1
Hypothetical protein.
       0.512
SFT57418.1
Lipid kinase, YegS/Rv2252/BmrU family.
   
 
  0.503
SFT37460.1
Ca-activated chloride channel family protein.
    
  0.478
SFT60287.1
Glycerophosphoryl diester phosphodiesterase.
      0.427
SFT66276.1
Hypothetical protein.
  
  
 0.401
Your Current Organism:
Idiomarina abyssalis
NCBI taxonomy Id: 86102
Other names: ATCC BAA-312, I. abyssalis, Idiomarina abyssalis Ivanova et al. 2000, KMM 227, marine bacterium KM227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.