Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KPD24891.1Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)    
Predicted Functional Partners:
KPD23163.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.771
KPD24102.1
Sugar epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.754
KPD23401.1
Copper-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.714
KPD23376.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.697
KPD24889.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.640
KPD24890.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.620
KPD24210.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.563
KPD24004.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.559
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
  0.557
KPD23118.1
Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.557
Your Current Organism:
Idiomarina zobellii
NCBI taxonomy Id: 86103
Other names: ATCC BAA-313, I. zobellii, Idiomarina zobellii Ivanova et al. 2000, KMM 231, marine bacterium KM231
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