Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KPD21379.1 | KPD23724.1 | AFK76_11925 | AFK76_07645 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Flagellar motor protein PomA; Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.910 |
| KPD21379.1 | KPD24728.1 | AFK76_11925 | AFK76_03825 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Branched-chain alpha-keto acid dehydrogenase subunit E2; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.737 |
| KPD21379.1 | KPD24738.1 | AFK76_11925 | AFK76_03875 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Flagellar biosynthesis protein FlgC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family. | 0.781 |
| KPD21379.1 | csrA | AFK76_11925 | AFK76_01355 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.488 |
| KPD21379.1 | hfq | AFK76_11925 | AFK76_04640 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA-binding protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.415 |
| KPD21379.1 | rho | AFK76_11925 | AFK76_05390 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.420 |
| KPD23724.1 | KPD21379.1 | AFK76_07645 | AFK76_11925 | Flagellar motor protein PomA; Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Derived by automated computational analysis using gene prediction method: Protein Homology. | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.910 |
| KPD23724.1 | KPD24728.1 | AFK76_07645 | AFK76_03825 | Flagellar motor protein PomA; Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Derived by automated computational analysis using gene prediction method: Protein Homology. | Branched-chain alpha-keto acid dehydrogenase subunit E2; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.901 |
| KPD23724.1 | KPD24738.1 | AFK76_07645 | AFK76_03875 | Flagellar motor protein PomA; Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Derived by automated computational analysis using gene prediction method: Protein Homology. | Flagellar biosynthesis protein FlgC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family. | 0.984 |
| KPD23724.1 | csrA | AFK76_07645 | AFK76_01355 | Flagellar motor protein PomA; Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Derived by automated computational analysis using gene prediction method: Protein Homology. | Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.505 |
| KPD23757.1 | csrA | AFK76_07820 | AFK76_01355 | Hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. | Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.508 |
| KPD23757.1 | ihfA | AFK76_07820 | AFK76_08275 | Hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.725 |
| KPD24728.1 | KPD21379.1 | AFK76_03825 | AFK76_11925 | Branched-chain alpha-keto acid dehydrogenase subunit E2; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.737 |
| KPD24728.1 | KPD23724.1 | AFK76_03825 | AFK76_07645 | Branched-chain alpha-keto acid dehydrogenase subunit E2; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellar motor protein PomA; Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.901 |
| KPD24728.1 | KPD24738.1 | AFK76_03825 | AFK76_03875 | Branched-chain alpha-keto acid dehydrogenase subunit E2; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellar biosynthesis protein FlgC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family. | 0.970 |
| KPD24728.1 | csrA | AFK76_03825 | AFK76_01355 | Branched-chain alpha-keto acid dehydrogenase subunit E2; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.588 |
| KPD24738.1 | KPD21379.1 | AFK76_03875 | AFK76_11925 | Flagellar biosynthesis protein FlgC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family. | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.781 |
| KPD24738.1 | KPD23724.1 | AFK76_03875 | AFK76_07645 | Flagellar biosynthesis protein FlgC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family. | Flagellar motor protein PomA; Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.984 |
| KPD24738.1 | KPD24728.1 | AFK76_03875 | AFK76_03825 | Flagellar biosynthesis protein FlgC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family. | Branched-chain alpha-keto acid dehydrogenase subunit E2; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.970 |
| KPD24738.1 | csrA | AFK76_03875 | AFK76_01355 | Flagellar biosynthesis protein FlgC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family. | Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.492 |
page 1 of 3