Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KPD24653.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (432 aa)    
Predicted Functional Partners:
KPD22090.1
Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.710
KPD22118.1
Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.654
KPD23114.1
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.597
KPD24652.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.557
KPD24008.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.468
KPD25096.1
Long-chain fatty acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.465
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.454
KPD23053.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.453
KPD23149.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.411
KPD23502.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.406
Your Current Organism:
Idiomarina zobellii
NCBI taxonomy Id: 86103
Other names: ATCC BAA-313, I. zobellii, Idiomarina zobellii Ivanova et al. 2000, KMM 231, marine bacterium KM231
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