STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KPD24663.1Calcium:proton antiporter; YrbG; inner membrane protein involved in cell envelope integrity; putative sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)    
Predicted Functional Partners:
KPD23847.1
Arsenic ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.700
prpE
Catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.686
KPD24657.1
Sodium:proton exchanger; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.608
KPD24661.1
Magnesium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.448
KPD24659.1
Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.435
KPD24660.1
Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
       0.435
KPD23454.1
Mechanosensitive ion channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.428
KPD24658.1
Iron deficiency-induced protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.410
KPD24656.1
Paraquat-inducible protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.409
KPD24655.1
Paraquat-inducible protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.408
Your Current Organism:
Idiomarina zobellii
NCBI taxonomy Id: 86103
Other names: ATCC BAA-313, I. zobellii, Idiomarina zobellii Ivanova et al. 2000, KMM 231, marine bacterium KM231
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