Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KPD24080.1Type II secretory pathway protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)    
Predicted Functional Partners:
KPD24258.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.932
KPD24077.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.806
KPD24078.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.806
KPD24079.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.806
KPD23493.1
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.792
KPD23444.1
General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.788
KPD24182.1
Methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.771
KPD24259.1
Type II secretory pathway component; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.768
KPD24076.1
Penicillin-sensitive transpeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.741
KPD24181.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.700
Your Current Organism:
Idiomarina zobellii
NCBI taxonomy Id: 86103
Other names: ATCC BAA-313, I. zobellii, Idiomarina zobellii Ivanova et al. 2000, KMM 231, marine bacterium KM231
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