Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KPD23460.1LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)    
Predicted Functional Partners:
KPD23461.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.989
KPD25030.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.988
KPD21379.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.982
KPD24132.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.909
acsA
acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
       0.784
KPD24847.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.782
KPD23168.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.757
KPD23883.1
Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.741
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.741
KPD23458.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.737
Your Current Organism:
Idiomarina zobellii
NCBI taxonomy Id: 86103
Other names: ATCC BAA-313, I. zobellii, Idiomarina zobellii Ivanova et al. 2000, KMM 231, marine bacterium KM231
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