STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPD23484.1OprF; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)    
Predicted Functional Partners:
tolB
Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 0.896
KPD22090.1
Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.837
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.828
KPD23745.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.826
KPD21580.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.807
KPD23458.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.806
KPD24823.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.801
KPD25070.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.801
KPD23893.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.801
KPD23502.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.801
Your Current Organism:
Idiomarina zobellii
NCBI taxonomy Id: 86103
Other names: ATCC BAA-313, I. zobellii, Idiomarina zobellii Ivanova et al. 2000, KMM 231, marine bacterium KM231
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.