STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPD23098.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (73 aa)    
Predicted Functional Partners:
KPD23097.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.753
KPD24342.1
Cytochrome oxidase biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.687
KPD24338.1
Cytochrome B559 subunit alpha; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
    0.575
KPD24343.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.575
KPD23096.1
Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.
       0.568
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.547
KPD24344.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.523
KPD23094.1
Anthranilate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.515
KPD24340.1
Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.472
KPD24341.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.446
Your Current Organism:
Idiomarina zobellii
NCBI taxonomy Id: 86103
Other names: ATCC BAA-313, I. zobellii, Idiomarina zobellii Ivanova et al. 2000, KMM 231, marine bacterium KM231
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.