STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aprSubtilisin BPN'; Belongs to the peptidase S8 family. (416 aa)    
Predicted Functional Partners:
CCQ45126.1
Fibronectin type III domain protein.
  
 0.884
CCQ46915.1
Fibronectin type III domain protein.
   
  0.690
CCQ47165.1
Putative uncharacterized protein.
       0.598
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.551
CCQ45551.1
ftsK/SpoIIIE family protein.
  
 
 0.492
CCQ46906.1
ftsK/SpoIIIE family protein.
  
 
 0.492
CCQ45402.1
Membrane protein.
    
   0.469
CCQ46383.1
Putative uncharacterized protein.
    
   0.469
CCQ47167.1
Hypothetical protein.
       0.464
CCQ45238.1
Putative uncharacterized domain protein.
   
  0.447
Your Current Organism:
Pseudarthrobacter siccitolerans
NCBI taxonomy Id: 861266
Other names: Arthrobacter siccitolerans, Arthrobacter siccitolerans Santacruz-Calvo et al. 2013, Arthrobacter sp. 4J27, CECT 8257, LMG 27359, LMG:27359, P. siccitolerans, Pseudarthrobacter siccitolerans (SantacCruz-Calvo et al. 2013) Busse 2016, strain 4J27
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