STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH57278.1Putative ATP-binding cassette transporter. (555 aa)    
Predicted Functional Partners:
SDH57235.1
Amino acid adenylation domain-containing protein.
 
  
 0.989
SDI08795.1
HxxPF-repeated domain-containing protein.
 
  
 0.941
SDH57255.1
Amino acid adenylation domain-containing protein.
 
  
 0.938
SDI03069.1
Amino acid adenylation domain-containing protein.
 
  
 0.864
SDI13392.1
Amino acid adenylation domain-containing protein.
 
  
 0.849
SDI08808.1
Amino acid adenylation domain-containing protein.
 
  
 0.802
SDI02746.1
Condensation domain-containing protein.
 
  
 0.693
purN
Phosphoribosylglycinamide formyltransferase-1; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
  
  
 0.650
SDG69792.1
Flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
    
   0.613
SDG90852.1
Flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
    
   0.613
Your Current Organism:
Vibrio xiamenensis
NCBI taxonomy Id: 861298
Other names: CGMCC 1.10228, DSM 22851, V. xiamenensis, Vibrio sp. G21, Vibrio xiamenensis Gao et al. 2012, strain G21
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